Roary is a high speed Pan Genome pipeline. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes. In order to achieve this speed up of the NP-hard task of Pan Genome assembly, Roary is non-deterministic.
This is a KBase module generated by the KBase Software Development Kit (SDK).
You will need to have the SDK installed to use this module. Learn more about the SDK and how to use it.
You can also learn more about the apps implemented in this module from its catalog page or its spec file.
Link to the github repository for this KBase SDK application github repo
Roary is developed by Sanget Pathogens and more information about its use can be found at their website Roary website and github repository for Roary Roary github
Add your KBase developer token to test_local/test.cfg and run the following:
$ make
$ kb-sdk testAfter making any additional changes to this repo, run kb-sdk test again to verify that everything still works.
To use this code in another SDK module, call kb-sdk install Roary in the other module's root directory.
You may find the answers to your questions in our FAQ or Troubleshooting Guide.