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222 followers · 7 following

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3

Organizations

@PapenfussLab @tidytranscriptomics-workshops

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  1. CuratedAtlasQueryR Public

    Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

    R 90 8

  2. MangiolaLaboratory/sccomp Public

    Mixed-effect model to test differences in cell type proportions from single-cell data, in R

    R 100 8

  3. tidyHeatmap Public

    Draw heatmap simply using a tidy data frame

    R 338 25

  4. tidyseurat Public

    Seurat meets tidyverse. The best of both worlds.

    R 159 13

  5. tidybulk Public template

    Brings bulk and pseudobulk transcriptomics to the tidyverse

    R 171 24

  6. tidySingleCellExperiment Public

    Brings SingleCellExperiment objects to the tidyverse

    R 36 10

1,105 contributions in the last year

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Contribution activity

April 2025

Created 3 commits in 2 repositories
Reviewed 1 pull request in 1 repository
stemangiola/tidybulk 1 pull request

Created an issue in MangiolaLaboratory/HPCell that received 1 comment

filter TCR, BCR, Ig from references before celltyping

@william-hutchison created a list of high contamination genes , we can exclude them from our cell type references in HPCell (if present). @william-…

1 comment
Started 1 discussion in 1 repository
ropensci/targets
3 contributions in private repositories Apr 3 – Apr 4
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