Release 1.0.0

Overview

PanDelos-plus continues to advance pan-genome content discovery by implementing an efficient, dictionary-based approach.
In this updated version, the original PanDelos pipeline has been re-engineered as a parallelized C++ implementation.
This enhancement significantly boosts performance and scalability when analyzing large and diverse genome collections.

Key features

Re-Engineered core
The core algorithm has been rewritten in C++ with parallelization, providing faster computation and better resource utilization compared to the previous implementation.

Dictionary-based similarity
The pipeline retains its innovative dictionary-based method for discovering pan-genome content, ensuring accurate detection of homologous genes across phylogenetically diverse genomes.

Integrated python modules:
Several Python modules have been seamlessly integrated with the C++ library. This hybrid design facilitates modular development and enhances the overall flexibility of the pipeline.

Streamlined pipeline access
A new Bash script, pandelosp.sh, has been introduced to coordinate the execution of the various modules. This script simplifies the user experience by providing a single entry point for running the complete PanDelos-plus pipeline.