Created a workflow for TARDIS High energy

[Knights-Templars]

📝 Description

Type: 🚀 feature |

This is a workflow created for the high energy module of TARDIS.

📌 Resources

Notebook added

[review-notebook-app]

Check out this pull request on 

See visual diffs & provide feedback on Jupyter Notebooks.

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[tardis-bot]

*beep* *bop*
Hi human,
I ran ruff on the latest commit (8ae0a3e).
Here are the outputs produced.
Results can also be downloaded as artifacts here.
Summarised output:

16	W293	[*] Blank line contains whitespace
5	F401	[*] `astropy.constants` imported but unused
3	W291	[*] Trailing whitespace
2	I001	[*] Import block is un-sorted or un-formatted

Complete output(might be large):

docs/workflow_notebook.ipynb:cell 1:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/workflows/tardis_he_workflow.py:1:1: I001 [*] Import block is un-sorted or un-formatted
tardis/workflows/tardis_he_workflow.py:2:17: F401 [*] `numpy` imported but unused
tardis/workflows/tardis_he_workflow.py:3:18: F401 [*] `pandas` imported but unused
tardis/workflows/tardis_he_workflow.py:4:25: F401 [*] `astropy.units` imported but unused
tardis/workflows/tardis_he_workflow.py:5:29: F401 [*] `astropy.constants` imported but unused
tardis/workflows/tardis_he_workflow.py:7:47: F401 [*] `tardis.energy_input.energy_source.get_nuclear_lines_database` imported but unused
tardis/workflows/tardis_he_workflow.py:71:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:82:1: W293 Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:91:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:101:1: W293 Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:105:90: W291 Trailing whitespace
tardis/workflows/tardis_he_workflow.py:110:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:123:1: W293 Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:130:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:135:1: W293 Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:165:54: W291 [*] Trailing whitespace
tardis/workflows/tardis_he_workflow.py:166:64: W291 [*] Trailing whitespace
tardis/workflows/tardis_he_workflow.py:171:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:176:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:180:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:182:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:184:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:188:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:192:1: W293 [*] Blank line contains whitespace
tardis/workflows/tardis_he_workflow.py:196:1: W293 [*] Blank line contains whitespace
Found 26 errors.
[*] 21 fixable with the `--fix` option (5 hidden fixes can be enabled with the `--unsafe-fixes` option).

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 48 lines in your changes missing coverage. Please review.

Project coverage is 69.46%. Comparing base (a51af90) to head (8ae0a3e).

Files with missing lines	Patch %	Lines
tardis/workflows/tardis_he_workflow.py	0.00%	48 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #2998      +/-   ##
==========================================
- Coverage   70.01%   69.46%   -0.55%     
==========================================
  Files         228      229       +1     
  Lines       16549    16597      +48     
==========================================
- Hits        11586    11529      -57     
- Misses       4963     5068     +105     

☔ View full report in Codecov by Sentry.
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[tardis-bot]

*beep* *bop*

Hi, human.

The docs workflow has succeeded ✔️

Click here to see your results.

[tardis-bot]

*beep* *bop*
Hi human,
I ran benchmarks as you asked comparing master (a51af90) and the latest commit (8ae0a3e).
Here are the logs produced by ASV.
Results can also be downloaded as artifacts here.

Significantly changed benchmarks:

All benchmarks:

Benchmarks that have stayed the same:

| Change   | Before [a51af908] <master>   | After [8ae0a3e2]    | Ratio   | Benchmark (Parameter)                                                                                                               |
|----------|------------------------------|---------------------|---------|-------------------------------------------------------------------------------------------------------------------------------------|
|          | 25.2±6μs                     | 32.4±9μs            | ~1.28   | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_last_interaction_tracker_list |
|          | 1.78±0.05ms                  | 2.22±0.08ms         | ~1.25   | transport_montecarlo_main_loop.BenchmarkTransportMontecarloMontecarloMainLoop.time_montecarlo_main_loop                             |
|          | 2.56±1μs                     | 2.01±1μs            | ~0.79   | transport_montecarlo_estimators_radfield_estimator_calcs.BenchmarkMontecarloMontecarloNumbaPacket.time_update_line_estimators       |
|          | 8.26±1ms                     | 6.46±0.03ms         | ~0.78   | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('macroatom')                                   |
|          | 9.58±1μs                     | 7.42±0.6μs          | ~0.78   | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket                                           |
|          | 852±100ns                    | 511±100ns           | ~0.60   | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_compton_opacity_calculation                                      |
|          | 641±100ns                    | 701±200ns           | 1.09    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_photoabsorption_opacity_calculation                              |
|          | 3.89±0.6μs                   | 4.21±0.6μs          | 1.08    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_within_shell                              |
|          | 1.56±0.6μs                   | 1.64±0.4μs          | 1.05    | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_line                    |
|          | 53.8±50μs                    | 56.7±30μs           | 1.05    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_scatter                                          |
|          | 681±100ns                    | 691±100ns           | 1.01    | opacities_opacity.BenchmarkMontecarloMontecarloNumbaOpacities.time_pair_creation_opacity_calculation                                |
|          | 3.05±0.04ms                  | 3.09±0.03ms         | 1.01    | opacities_opacity_state.BenchmarkOpacitiesOpacityState.time_opacity_state_initialize('scatter')                                     |
|          | 45.3±0s                      | 45.8±0.8s           | 1.01    | run_tardis.BenchmarkRunTardis.time_run_tardis                                                                                       |
|          | 1.27±0m                      | 1.29±0.01m          | 1.01    | run_tardis.BenchmarkRunTardis.time_run_tardis_rpacket_tracking                                                                      |
|          | 43.7±20μs                    | 44.3±30μs           | 1.01    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_line_emission                                         |
|          | 759±2ns                      | 756±3ns             | 1.00    | transport_montecarlo_interaction.BenchmarkTransportMontecarloInteraction.time_thomson_scatter                                       |
|          | 2.21±0m                      | 2.20±0m             | 0.99    | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_FormalIntegrator_functions                                 |
|          | 212±0.09ns                   | 209±0.4ns           | 0.99    | spectrum_formal_integral.BenchmarkTransportMontecarloFormalIntegral.time_intensity_black_body                                       |
|          | 1.29±0.01μs                  | 1.25±0.02μs         | 0.97    | transport_geometry_calculate_distances.BenchmarkTransportGeometryCalculateDistances.time_calculate_distance_boundary                |
|          | 38.8±0.3μs                   | 37.2±0.07μs         | 0.96    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_generate_rpacket_tracker_list                  |
|          | 3.98±0.2μs                   | 3.78±0.3μs          | 0.95    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_bad_vpacket                                       |
|          | 68.7±0.9ms                   | 64.9±0.4ms          | 0.94    | transport_montecarlo_packet_trackers.BenchmarkTransportMontecarloPacketTrackers.time_rpacket_trackers_to_dataframe                  |
|          | 9.16±3μs                     | 8.64±2μs            | 0.94    | transport_montecarlo_vpacket.BenchmarkMontecarloMontecarloNumbaVpacket.time_trace_vpacket_volley                                    |
|          | 5.70±1ms                     | 5.22±0.9ms          | 0.92    | transport_montecarlo_single_packet_loop.BenchmarkTransportMontecarloSinglePacketLoop.time_single_packet_loop                        |

If you want to see the graph of the results, you can check it here