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Sample project data

This is sample project data to be used by the CAMH SCWG workshops.

There are 350 subjects (ID: subject1 .. subject350), and the data is organized like so:

cleaned_data/
    demographic.csv 
    genotype.csv
    cognitive.csv
    structural/
        subject1_t1.nii.gz
        ...
    <other-datatype>/
        ...

Structural imaging data

The image is taken from the Winterburn Hippocampal Atlases, and downsampled to make a small image:

autocrop -isostep 15 subject1_t1.mnc subject1_t1_res.mnc
mnc2nii subject1_t1_res.mnc subject1_t1_res.nii
gzip subject1_t1_res.nii

for i in {1..350}; do 
    cp subject1_t1_res.nii.gz structural/subject${i}_t1.nii.gz
done