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Installation

Create a new conda environment

conda create -y -n front-tracking python=3.8
conda activate front-tracking

Install ffmpeg

conda install -c conda-forge ffmpeg

Install Matlab-Python bridge Navigate to your matlab install and run the setup.py file there.

cd "c:\Program Files\MATLAB\R2021a\extern\engines\python"
python setup.py install

See https://www.mathworks.com/help/matlab/matlab_external/install-the-matlab-engine-for-python.html for more details Tested successfully with R2021a and 2021b. Possibly some issues on mac using parallel-for loops

Install front-tracking-toolkit

pip install -e .

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Toolkit for tracking fluorescent tracers during transcranial imagining

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