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HybPhyloMaker v1.4
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@tomas-fer tomas-fer released this 09 Mar 21:46
· 556 commits to master since this release
v1.4
1da5bb9

Changes in this release:

  • kindel is now used for consensus calling (OCOCO is still an option)
  • exons can be put into the correct reading frame (and translated to AA) - new script 4b
  • all subsequent scripts implements the option for work with frame corrected data
  • gene trees can be constructed with partitioning (by exon or by codon position)
  • RAxML tests for completely invariable sites and use the reduced dataset if necessary
  • new settings (work with frame corrected data, gene partitioning, consensus calling)
  • new software is required and its installation added to install_software.sh (kindel, EMBOSS)
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