Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R

This repository contains the python package for Helical

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Sequence alignment tools

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Find and visualize rearrangements in DNA sequences

A python wrapper for the benchling api

A python package and a set of shell commands to handle GTF files

👾 Generate identicons for DNA sequences with Python

Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AISTATS, 2022).

Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification

Read DNA sequences from colourful Microsoft Word documents

A deep learning model (EVO2-500M) for predicting host specificity of eukaryote-infecting viruses CDNA sequence

This bartender version could handle arbitrary length of barcode

A method to predict DNA shape features considering farther flanking region.

Binomica Public Repository for Biological Parts

Web application for designing DNA structures such as DNA origami.

GraphPart, a data partitioning method for ML on biological sequences