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1. prokka prokka Public

   ⚡ ♒ Rapid prokaryotic genome annotation

   Perl 888 227

2. snippy snippy Public

   ✂️ ⚡ Rapid haploid variant calling and core genome alignment

   Perl 508 118

3. shovill shovill Public

   ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

   Perl 222 46

4. abricate abricate Public

   🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

   Perl 401 96

5. nullarbor nullarbor Public

   💾 📃 "Reads to report" for public health and clinical microbiology

   Perl 139 38

6. mlst mlst Public

   🆔 Scan contig files against PubMLST typing schemes

   Shell 222 48