The Collaborative and Intergrative Genomics (CIG) is a group in the McDonnell Genome Institute (MGI) at the Washington University School of Medicine (WUSM).
In this repo, we share genomics pipelines, tools, and tasks, mostly in the form of WDL. Corresponding Dockerfiles and scripts are at CIG Containters.
| Path | Description |
|---|---|
| wdl/pipelines | full start to end workflows that produce outputs from many tasks |
| wdl/tasks | wrapped command line interfaces and scripts (must be incorporated into tools/pipelines) |
| wdl/tools | stand alone workflows that combine a few tasks to produce outputs |
| wdl/structs | data structures and types for pipelines, tools, and tasks |
| import | assorted unassimilated pipelines, code, etc. |