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Diffusion model of a system where sender strains produce AHL in the presence of arabinose. AHL diffuses and activates GFP production in receiver strains

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ucl-cssb/colony-com

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This branch is 35 commits ahead of, 1 commit behind luca-rosa/rd-model:master.

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cpbarnescpbarnes
added timecourse plots and model for the characterisation layout
Nov 20, 2024
d4e356b · Nov 20, 2024

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36 Commits
char-ahl
char-ahl
Nov 20, 2024
examples
examples
Nov 2, 2023
.gitignore
.gitignore
Mar 2, 2023
LICENSE
LICENSE
Apr 13, 2020
README.md
README.md
Apr 13, 2020
helper_functions.py
helper_functions.py
Jul 8, 2021
model_motile_bacteriocin.py
model_motile_bacteriocin.py
Jun 11, 2021
multi_plate.py
multi_plate.py
Jun 11, 2021
plate.py
plate.py
Nov 20, 2024
species.py
species.py
Jul 29, 2020

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colony-com

Diffusion model of a system where sender strains produce AHL in the presence of arabinose. AHL diffuses and activates GFP production in receiver strains. Orignal model inspired by Doong et. al. bioRxiv 2017: https://www.biorxiv.org/content/10.1101/220244v1

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Diffusion model of a system where sender strains produce AHL in the presence of arabinose. AHL diffuses and activates GFP production in receiver strains

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