Build ufs_utils on Gaea-C5 (#935)

Update/create the following: the build module files. the link_fixdirs.sh
script, and the README.md.

Fixes #934

README.md

@@ -59,7 +59,7 @@ It also uses the following repositories:
 
 ## Installing
 
-On Orion, Hercules, Jet, Hera and WCOSS2 do the following:
+On Orion, Hercules, Jet, Hera, S4, Gaea and WCOSS2 do the following:
 
 1) Set the 'fixed' directories using the `link_fixdirs.sh`
 script in `./fix`. Usage: `./link_fixdirs.sh $RUN_ENVIR $machine`,

fix/link_fixdirs.sh

@@ -9,15 +9,15 @@ set -ex
 #               'nco' (copies data).
 #
 #  $machine - is the machine. Choices are:
-#             'wcoss2', 'hera', 'jet', 'orion', 'hercules', 's4'
+#             'wcoss2', 'hera', 'jet', 'orion', 'hercules', 's4', 'gaea'
 
 RUN_ENVIR=${1}
 machine=${2}
 
 if [ $# -lt 2 ]; then
     set +x
     echo '***ERROR*** must specify two arguements: (1) RUN_ENVIR, (2) machine'
-    echo ' Syntax: link_fv3gfs.sh ( nco | emc ) ( wcoss2 |  hera  | jet | orion | hercules | s4 )'
+    echo ' Syntax: link_fv3gfs.sh ( nco | emc ) ( wcoss2 |  hera  | jet | orion | hercules | s4 | gaea )'
     exit 1
 fi
 
@@ -28,10 +28,10 @@ if [ $RUN_ENVIR != emc -a $RUN_ENVIR != nco ]; then
     exit 1
 fi
 
-if [ $machine != wcoss2 -a $machine != hera -a $machine != jet -a $machine != orion -a $machine != s4 -a $machine != hercules ]; then
+if [ $machine != wcoss2 -a $machine != hera -a $machine != jet -a $machine != orion -a $machine != s4 -a $machine != hercules -a $machine != gaea ]; then
     set +x
     echo '***ERROR*** unsupported machine'
-    echo 'Syntax: link_fv3gfs.sh ( nco | emc ) ( wcoss2 | hera | jet | orion | hercules | s4 )'
+    echo 'Syntax: link_fv3gfs.sh ( nco | emc ) ( wcoss2 | hera | jet | orion | hercules | s4 | gaea )'
     exit 1
 fi
 
@@ -54,6 +54,8 @@ elif [ $machine = "wcoss2" ]; then
     FIX_DIR="/lfs/h2/emc/global/noscrub/emc.global/FIX/fix"
 elif [ $machine = "s4" ]; then
     FIX_DIR="/data/prod/glopara/fix"
+elif [ $machine = "gaea" ]; then
+    FIX_DIR="/gpfs/f5/epic/proj-shared/global/glopara/data/fix"
 fi
 
 am_ver=${am_ver:-20220805}

modulefiles/build.gaea.intel.lua

@@ -0,0 +1,66 @@
+help([[
+Load environment to compile UFS_UTILS on Gaea using Intel
+]])
+
+prepend_path("MODULEPATH", "/sw/rdtn/modulefiles")
+load("hsi")
+
+prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
+
+stack_intel_ver=os.getenv("stack_intel_ver") or "2023.1.0"
+load(pathJoin("stack-intel", stack_intel_ver))
+
+stack_cray_mpich_ver=os.getenv("stack_cray_mpich_ver") or "8.1.25"
+load(pathJoin("stack-cray-mpich", stack_cray_mpich_ver))
+
+cmake_ver=os.getenv("cmake_ver") or "3.23.1"
+load(pathJoin("cmake", cmake_ver))
+
+bacio_ver=os.getenv("bacio_ver") or "2.4.1"
+load(pathJoin("bacio", bacio_ver))
+
+g2_ver=os.getenv("g2_ver") or "3.4.5"
+load(pathJoin("g2", g2_ver))
+
+ip_ver=os.getenv("ip_ver") or "4.3.0"
+load(pathJoin("ip", ip_ver))
+
+nemsio_ver=os.getenv("nemsio_ver") or "2.5.4"
+load(pathJoin("nemsio", nemsio_ver))
+
+sp_ver=os.getenv("sp_ver") or "2.5.0"
+load(pathJoin("sp", sp_ver))
+
+w3emc_ver=os.getenv("w3emc_ver") or "2.10.0"
+load(pathJoin("w3emc", w3emc_ver))
+
+-- Uncomment when CHGRES_ALL is ON
+--sfcio_ver=os.getenv("sfcio_ver") or "1.4.1"
+--load(pathJoin("sfcio", sfcio_ver))
+
+sigio_ver=os.getenv("sigio_ver") or "2.3.2"
+load(pathJoin("sigio", sigio_ver))
+
+zlib_ver=os.getenv("zlib_ver") or "1.2.13"
+load(pathJoin("zlib", zlib_ver))
+
+png_ver=os.getenv("png_ver") or "1.6.37"
+load(pathJoin("libpng", png_ver))
+
+netcdf_c_ver=os.getenv("netcdf_c_ver") or "4.9.2"
+load(pathJoin("netcdf-c", netcdf_c_ver))
+
+netcdf_fortran_ver=os.getenv("netcdf_fortran_ver") or "4.6.1"
+load(pathJoin("netcdf-fortran", netcdf_fortran_ver))
+
+nccmp_ver=os.getenv("nccmp_ver") or "1.9.0.1"
+load(pathJoin("nccmp", nccmp_ver))
+
+esmf_ver=os.getenv("esmf_ver") or "8.6.0"
+load(pathJoin("esmf", esmf_ver))
+
+nco_ver=os.getenv("nco_ver") or "5.0.6"
+load(pathJoin("nco", nco_ver))
+
+whatis("Description: UFS_UTILS build environment")
+

sorc/machine-setup.sh

@@ -38,43 +38,17 @@ elif [[ -d /scratch1 ]] ; then
     fi
     target=hera
     module purge
-elif [[ -d /lustre && -d /ncrc ]] ; then
+elif [[ -d /gpfs && -d /ncrc ]] ; then
     # We are on GAEA.
     if ( ! eval module help > /dev/null 2>&1 ) ; then
-        # We cannot simply load the module command.  The GAEA
-        # /etc/profile modifies a number of module-related variables
-        # before loading the module command.  Without those variables,
-        # the module command fails.  Hence we actually have to source
-        # /etc/profile here.
-        source /etc/profile
-        __ms_source_etc_profile=yes
-    else
-        __ms_source_etc_profile=no
-    fi
-    module purge > /dev/null 2>&1
-    module purge
-# clean up after purge
-    unset _LMFILES_
-    unset _LMFILES_000
-    unset _LMFILES_001
-    unset LOADEDMODULES
-    module load modules
-    if [[ -d /opt/cray/ari/modulefiles ]] ; then
-        module use -a /opt/cray/ari/modulefiles
-    fi
-    if [[ -d /opt/cray/pe/ari/modulefiles ]] ; then
-        module use -a /opt/cray/pe/ari/modulefiles
-    fi
-    if [[ -d /opt/cray/pe/craype/default/modulefiles ]] ; then
-        module use -a /opt/cray/pe/craype/default/modulefiles
-    fi
-    if [[ -s /etc/opt/cray/pe/admin-pe/site-config ]] ; then
-        source /etc/opt/cray/pe/admin-pe/site-config
-    fi
-    if [[ "$__ms_source_etc_profile" == yes ]] ; then
+      # We cannot simply load the module command.  The GAEA
+      # /etc/profile modifies a number of module-related variables
+      # before loading the module command.  Without those variables,
+      # the module command fails.  Hence we actually have to source
+      # /etc/profile here.
       source /etc/profile
-      unset __ms_source_etc_profile
     fi
+    module reset
     target=gaea
 elif [[ "$(hostname)" =~ "Orion" ]]; then
     target="orion"