Merge pull request #103 from usegalaxy-eu/paired-fix

Bugfix paired end reads throwing type error
usegalaxy-eu · Jan 3, 2025 · 6101dc4 · 6101dc4
2 parents b58e4db + 6cb8f1a
commit 6101dc4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ena_upload/templates/ENA_template_experiments.xml b/ena_upload/templates/ENA_template_experiments.xml
@@ -49,7 +49,7 @@ def mandatorytest(row, column, index):
                     </py:if>
                     <py:if test="mandatorytest(row, 'library_layout', index)">
                     <LIBRARY_LAYOUT py:choose="">
-                        <PAIRED py:when="row.library_layout.lower().strip() == 'paired'" NOMINAL_LENGTH="${row.insert_size}" />
+                        <PAIRED py:when="row.library_layout.lower().strip() == 'paired'" NOMINAL_LENGTH="${int(row.insert_size)}" />
                         <SINGLE py:when="row.library_layout.lower().strip() == 'single'" />
                     </LIBRARY_LAYOUT>
                     </py:if>