using tables from supplementary instead from codex directly

usegalaxy-eu · Feb 21, 2025 · 63ddebb · 63ddebb
1 parent 8a5fceb
commit 63ddebb
Showing 1 changed file with 20 additions and 20 deletions.
diff --git a/bin/statistics_calculations.ipynb b/bin/statistics_calculations.ipynb
@@ -48,9 +48,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "tutorials_url = \"https://raw.githubusercontent.com/galaxyproject/galaxy_codex/refs/heads/main/communities/microgalaxy/resources/tutorials.tsv\"\n",
-    "tools_url = \"https://raw.githubusercontent.com/galaxyproject/galaxy_codex/refs/heads/main/communities/microgalaxy/resources/curated_tools.tsv\"\n",
-    "workflows_url = \"https://raw.githubusercontent.com/galaxyproject/galaxy_codex/refs/heads/main/communities/microgalaxy/resources/curated_workflows.tsv\"\n",
+    "tutorials_url = \"../docs/supplementary/supplementary_table_5.tsv\"\n",
+    "tools_url = \"../docs/supplementary/supplementary_table_3.tsv\"\n",
+    "workflows_url = \"../docs/supplementary/supplementary_table_4.tsv\"\n",
     "\n",
     "tutorials_df = pd.read_csv(tutorials_url, sep=\"\\t\")\n",
     "tutorials_df = tutorials_df.drop_duplicates(keep=\"last\")\n",
@@ -100,7 +100,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 4,
+   "execution_count": 3,
    "metadata": {},
    "outputs": [
     {
@@ -340,7 +340,7 @@
        "[5 rows x 22 columns]"
       ]
      },
-     "execution_count": 4,
+     "execution_count": 3,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -375,7 +375,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 4,
    "metadata": {},
    "outputs": [
     {
@@ -615,7 +615,7 @@
        "[5 rows x 22 columns]"
       ]
      },
-     "execution_count": 5,
+     "execution_count": 4,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -650,7 +650,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
@@ -673,13 +673,13 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "/tmp/ipykernel_24594/3973245857.py:7: SettingWithCopyWarning: \n",
+      "/tmp/ipykernel_7418/3973245857.py:7: SettingWithCopyWarning: \n",
       "A value is trying to be set on a copy of a slice from a DataFrame.\n",
       "Try using .loc[row_indexer,col_indexer] = value instead\n",
       "\n",
       "See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy\n",
       "  df2[\"Video Count\"] = df2[\"Video\"].apply(lambda x: len(x.split(',')) if isinstance(x, str) and x.strip() else 0)\n",
-      "/tmp/ipykernel_24594/3973245857.py:8: SettingWithCopyWarning: \n",
+      "/tmp/ipykernel_7418/3973245857.py:8: SettingWithCopyWarning: \n",
       "A value is trying to be set on a copy of a slice from a DataFrame.\n",
       "Try using .loc[row_indexer,col_indexer] = value instead\n",
       "\n",
@@ -827,7 +827,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -859,7 +859,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 7,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -891,7 +891,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 8,
    "metadata": {},
    "outputs": [
     {
@@ -927,7 +927,7 @@
        " Name: 181, Length: 75, dtype: object)"
       ]
      },
-     "execution_count": 9,
+     "execution_count": 8,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -956,7 +956,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 9,
    "metadata": {},
    "outputs": [
     {
@@ -1003,7 +1003,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": 10,
    "metadata": {},
    "outputs": [
     {
@@ -1220,7 +1220,7 @@
        "4            Formatting  "
       ]
      },
-     "execution_count": 12,
+     "execution_count": 10,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1255,7 +1255,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
+   "execution_count": 11,
    "metadata": {},
    "outputs": [
     {
@@ -1472,7 +1472,7 @@
        "4         Undefined  "
       ]
      },
-     "execution_count": 13,
+     "execution_count": 11,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -1507,7 +1507,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 15,
+   "execution_count": 12,
    "metadata": {},
    "outputs": [
     {