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Enhance PARM_predict.py with error handling and evaluation improvements #22

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Enhance PARM_predict.py with error handling and evaluation improvements #22

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e3edfb2
Update the FEATname to avoid error
luciabarb Apr 1, 2026
885f61b
Update PARM_predict.py
luciabarb Apr 13, 2026
1689abc
Update PARM_predict.py
luciabarb Apr 13, 2026
54b262b
Fix syntax error in index array creation
luciabarb Apr 13, 2026
8810af1
Rename FEATtype to features_fragments_selection
luciabarb Apr 13, 2026
2968322
Fix feature index assignment in PARM_predict.py
luciabarb Apr 13, 2026
d7916b2
Update PARM_predict.py
luciabarb Apr 13, 2026
199a551
adding start_motif to avoid error
Apr 14, 2026
4c1ffe6
add internal evaluation
Apr 14, 2026
cd141ca
Fix import error of evaluation model
Apr 14, 2026
9e305ed
fix importing libraries
Apr 14, 2026
aab6695
fix importing libraries
Apr 14, 2026
47f15e4
add info documentation
Apr 14, 2026
cdfe307
adapt for multiple heads
Apr 14, 2026
8d9c229
change default argument batch size
Apr 14, 2026
400fb66
change default argument batch size
Apr 14, 2026
5e7a5e3
change default argument batch size
Apr 14, 2026
70ef307
Add plots for evaluation of forward and reverse motif
Apr 17, 2026
bd6b4b6
Add plots for evaluation of forward and reverse motif
Apr 17, 2026
471e763
make normalization_method (Log2RPM) a parameter for model evaluation
vhfsantos Apr 21, 2026
3582d54
make normalization_method (Log2RPM) a parameter for model evaluation
vhfsantos Apr 21, 2026
d0138f5
Add internal versioning control
vhfsantos Apr 21, 2026
5d29c75
Add internal versioning control
vhfsantos Apr 21, 2026
267ce38
Make filter size a parameter for model evaluation
vhfsantos Apr 21, 2026
69dc1a3
Handle TSS_EnhA in feature selection in get_test_fold_predictions
vhfsantos Apr 21, 2026
643d1a7
Version bump
vhfsantos Apr 21, 2026
3cba854
Merge pull request #1 from luciabarb/vini_dev
luciabarb Apr 21, 2026
4912e44
Fixing issue calling hits while plotting
Apr 22, 2026
e95361b
Merge branch 'main' of https://github.com/luciabarb/PARM_internal_use
Apr 22, 2026
940ae95
Fixing issue calling hits while plotting
Apr 22, 2026
c01c715
Merge branch 'main' into main
luciabarb Apr 22, 2026
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