These two pipelines are a synthesis from multiple sources - hardly my own code/mostly not my own words. The first comes from the DNASeq pipeline (Kapun's DrosEU work) and its associated resources, albeit in slightly more detail and the RNASeq comes from a mixture of a workshop + internet resources.
I would suggest if you want to use this as a tool/guideline, to check out the Other folder first to familiarize yourself with setting up/running basic commands on the cluster. Then proceeding to one of the pipelines.
Have fun and 加油!! :)
Andre: https://knowyourmeme.com/photos/962627-cheeky-nandos
Shangzhe:
