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aubreyodom committed Jan 26, 2024
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2 changes: 1 addition & 1 deletion .gitignore
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.Rproj.user
# pkgdown
Legato-docs/
Legato-docs
*.Rproj
8 changes: 4 additions & 4 deletions README.md
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# LegATo
### A Longitudinal mEtaGenomic Analysis Toolkit <img src="https://github.com/aubreyodom/Legato-docs/blob/main/legato-logo.jpg?raw=true" align="right" width="140">
### A Longitudinal mEtaGenomic Analysis Toolkit <img src="https://github.com/wejlab/Legato-docs/blob/main/legato-logo.jpg?raw=true" align="right" width="140">

LegATo is a suite of open-source software tools for longitudinal microbiome analysis. It is extendable to
several different study forms with optimal ease-of-use for researchers. Microbiome time-series data
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In music, legato indicates that notes are played or sung smoothly and connected over time, without a noticeable break between them. The LegATo package facilitates a cohesive and interconnected understanding of the microbial communities represented by sequencing samples longitudinally, much like the smooth connection of musical notes in a legato passage.

## Documentation
Documentation and tutorials for LegATo are available at our [website](https://aubreyodom.github.io/LegATo-docs/).
Documentation and tutorials for LegATo are available at our [website](https://wejlab.github.io/LegATo-docs/).

Check out a thorough tutorial on proper usage of our package [here](https://aubreyodom.github.io/LegATo-docs/articles/LegATo_vignette.html).
Check out a thorough tutorial on proper usage of our package [here](https://wejlab.github.io/LegATo-docs/articles/LegATo_vignette.html).

## Installation
LegATo requires R Version 4.3.
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```
if (!requireNamespace("devtools", quietly=TRUE))
install.packages("devtools")
devtools::install_github("aubreyodom/LegATo")
devtools::install_github("wejlab/LegATo")
```
2 changes: 1 addition & 1 deletion pkgdown/_pkgdown.yml
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- create_formatted_MAE
- clean_animalcules_MAE
- filter_animalcules_MAE
- title: "Reformat a MAE Objects into a Data Frame"
- title: "Reformat a MAE Object into a Data Frame"
desc: "Take a animalcules-formatted MAE and reformat for visualizationa and analysis."
contents:
- parse_MAE_SE
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