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Dillon Oswald: Syllabus Updates #1

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12 changes: 7 additions & 5 deletions BiomedicalDataScience_Syllabus.Rmd
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Original file line number Diff line number Diff line change
@@ -1,7 +1,9 @@
---
title: "High Throughput Biomedical Data Analysis"
date: Spring (April-June), 2024
output: word_document
date: "Spring (April-June), 2024"
output:
pdf_document: default
word_document: default
---

```{r setup, include=FALSE}
Expand Down Expand Up @@ -96,12 +98,12 @@ Violations of academic integrity will be treated in accordance with university p
Sequencing data preprocessing and quality control (Week 1)

* 4/22/24: Course introduction; Installation; Introduction to R
* 4/24/24: Essential tools for Data Science: Unix, GitHub, HPC
* 4/24/24: More Introduction to R, R Markdown, and Unix

Sequencing data preprocessing and quality control (Week 2)

* 4/29/24: Data formats (.fasta, .fastq, .sam/.bam); FASTQC and multiQC
* 5/1/24: Sequence trimming and QC; alignment and wrangling
* 4/29/24: Introduction to Amarel and OARC
* 5/1/24: Introduction to Github; Introduction to FASTA and Other Sequencing Formats

Genomics data analysis: mutation, linkage, and phylogenetics (Week 3)

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