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made a silly edit #2

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5cf1ad2
Initial commit
ctb Nov 4, 2012
db47b3d
initial sphinx commit
ctb Nov 4, 2012
d6dbb0e
Test of within-github editing.
ctb Nov 4, 2012
0cbc939
Another test of in-browser editing.
ctb Nov 4, 2012
de7adbd
made 'all' target generate 'html'
ctb Nov 4, 2012
5fcb83f
added disqus commenting to layout
ctb Nov 4, 2012
80992d1
Merge branch 'master' of github.com:ctb/labibi
ctb Nov 4, 2012
5fc83a7
removed test messages
ctb Nov 4, 2012
cb20585
added ~ to .gitignore
ctb Nov 4, 2012
5a8e621
trying out plone edit-this button
ctb Nov 4, 2012
a3d3ebe
hacked page
ctb Nov 4, 2012
6eeb994
tag
ctb Nov 4, 2012
39aac97
cleanup for post
ctb Nov 4, 2012
c260e75
cleanup for post 2: removed hardcoded header
ctb Nov 4, 2012
7753613
fixed edit and google analytics stuff
ctb Nov 4, 2012
651ba12
whoops, added static files
ctb Nov 4, 2012
2ea89b7
added template config variables
ctb Nov 4, 2012
3e70b1a
doc stuff
ctb Nov 4, 2012
214d9d6
updated demo page with a HOWTO
ctb Nov 4, 2012
d4d52dc
Added a test edit.
ctb Nov 4, 2012
4a73ef6
updated with github link to source
ctb Nov 4, 2012
1c38375
updated README
ctb Nov 4, 2012
4c56e05
Added link to blog post.
ctb Nov 4, 2012
4aa6de8
Update with a test
ctb Nov 4, 2012
eeab038
Removed test/demo text
ctb Nov 4, 2012
8276402
properly inserted disqus_shortname in disqus code
ctb Nov 5, 2012
c7716f0
Merge branch 'master' of github.com:ctb/labibi
ctb Nov 5, 2012
0602da5
Update _templates/page.html
yarko Jan 28, 2013
82efa5e
Update conf.py
yarko Jan 28, 2013
c75ed4b
this form is less error-prone
Jan 28, 2013
2f8a361
Merge pull request #2 from yarko/patch-1
ctb Mar 8, 2013
90b2d3f
list of things to change for a new project
ctb Nov 5, 2013
ed2feda
Merge ../labibi
ctb Aug 3, 2014
0bc1de8
configured for analytics, disqus, etc.
ctb Aug 3, 2014
9ba8a71
ping
ctb Aug 3, 2014
887a3a5
fiz
ctb Aug 3, 2014
cb26292
remove editme window
ctb Aug 3, 2014
a4dbdd5
changed .rst to .txt
ctb Aug 3, 2014
92d0424
fixed up 2014
ctb Aug 3, 2014
d657861
more updates
ctb Aug 3, 2014
3367ef4
updated instructors
ctb Aug 3, 2014
17f958d
more cleanup
ctb Aug 3, 2014
7924c88
updated all but windows instructions
ctb Aug 4, 2014
a13623f
add terminating
ctb Aug 4, 2014
ab9a9c1
fix title
ctb Aug 4, 2014
65ed80d
diff AMI instructions
ctb Aug 4, 2014
5dfc584
day 1 and day 2
ctb Aug 4, 2014
de1e762
added CoC
ctb Aug 4, 2014
edd5e03
all updated
ctb Aug 4, 2014
538806d
updated screenshots /ht aswathy
ctb Aug 4, 2014
9380cc3
update
ctb Aug 4, 2014
a4645c6
reworked quality tutorial
ialbert Aug 5, 2014
cc920e4
reworked quality tutorial
ialbert Aug 5, 2014
1cad9a9
reworked quality tutorial
ialbert Aug 5, 2014
f516330
update
ialbert Aug 5, 2014
a33007b
update
ialbert Aug 5, 2014
f684476
update to QC
ialbert Aug 5, 2014
f3bee01
update
ialbert Aug 5, 2014
dee4c9f
foo
ctb Aug 5, 2014
0f1baa3
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
ctb Aug 5, 2014
a9adcbf
update the makefile
ialbert Aug 5, 2014
9e2323b
update the makefile
ialbert Aug 5, 2014
d131ddf
update;
ialbert Aug 5, 2014
37bbb78
update
ialbert Aug 5, 2014
d2d5ba0
added assess quest
ctb Aug 5, 2014
dac5c7e
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
ctb Aug 5, 2014
7e44f32
updated make
ialbert Aug 5, 2014
081b47b
updated make
ialbert Aug 5, 2014
dbefea8
small fixes
ialbert Aug 5, 2014
f37c2f7
small fixes
ialbert Aug 5, 2014
ebab857
update
ialbert Aug 5, 2014
d340cca
modify dropbox install doc, root permisison
Aug 5, 2014
7ca3417
updated schedule thru th
ctb Aug 6, 2014
e739492
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
ctb Aug 6, 2014
5f62d1d
variant calling
ctb Aug 6, 2014
502db34
added lecture for today
ctb Aug 6, 2014
e8c4a67
statistics
ctb Aug 6, 2014
1e7155f
fix ami
ctb Aug 6, 2014
6221f11
work on makefile
ialbert Aug 6, 2014
42d695b
adding tutorial file
ialbert Aug 6, 2014
a4f132c
Merge branch '2014' of github.com:ngs-docs/angus into 2014
ialbert Aug 6, 2014
cea7552
adding makefile
ialbert Aug 6, 2014
d6286b9
update
ialbert Aug 6, 2014
d341624
update
ialbert Aug 6, 2014
af7d688
update
ialbert Aug 6, 2014
4aca794
update
ialbert Aug 7, 2014
6c8207f
update
ialbert Aug 7, 2014
325b0b4
added file
ialbert Aug 7, 2014
c56fa31
added file
ialbert Aug 7, 2014
e2b53d3
update schedule
ctb Aug 7, 2014
a39c434
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
ctb Aug 7, 2014
58221df
added kzoo
ctb Aug 7, 2014
7cebfcd
fix spelling
ctb Aug 7, 2014
99ba247
assembly tut
ctb Aug 7, 2014
8c29034
added tut
ctb Aug 7, 2014
dda91b5
foo
ctb Aug 7, 2014
49801c7
more fix
ctb Aug 7, 2014
97369c4
of
ctb Aug 7, 2014
2dd8e1b
Added R tutorial
idworkin Aug 7, 2014
9c86ed1
fixed k21
ctb Aug 7, 2014
0cb0a4f
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
ctb Aug 7, 2014
a533d63
Fixed a couple of typos and a broken hyperlink
willpitchers Aug 7, 2014
c3e424c
Update R_Introductory_tutorial_2014.md
ACharbonneau Aug 7, 2014
858c0ff
added additional R tutorial and .rst
idworkin Aug 7, 2014
e6a61c2
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
idworkin Aug 7, 2014
599c7e9
added link to R rst file
idworkin Aug 7, 2014
cdf4446
Update index.txt
idworkin Aug 7, 2014
aed9ec8
fucking colons!
idworkin Aug 7, 2014
9f9bbe0
changing extensions from .rst to .txt
idworkin Aug 7, 2014
e7b7e8e
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
idworkin Aug 7, 2014
7e8f145
Update index.txt
idworkin Aug 7, 2014
022a990
added link to github md version
idworkin Aug 7, 2014
3c0141c
Update R_Introductory_tutorial_2014.txt
idworkin Aug 7, 2014
c0fbc54
Update R_Introductory_tutorial_2014.txt
idworkin Aug 7, 2014
0cff5fd
added the bioinfo RPG
ialbert Aug 8, 2014
07ad446
minor typos
willpitchers Aug 8, 2014
900faae
Martin's files added
idworkin Aug 8, 2014
ae035fb
Martin stuff
idworkin Aug 8, 2014
f213190
Rename vcf_exploration.txt to vcf_exploration.md
idworkin Aug 8, 2014
4275b5a
added link to Martin's Rst file
idworkin Aug 8, 2014
0af55cb
Rename vcf_exploration.rst to vcf_exploration.txt
idworkin Aug 8, 2014
2dc44fd
Delete foil.pdf
idworkin Aug 8, 2014
6528dc5
moved foil.pdf
idworkin Aug 8, 2014
92a814c
Fixed small typo
standage Aug 8, 2014
7b0ea45
Update index.txt
idworkin Aug 8, 2014
ce5f9f7
Update index.txt
idworkin Aug 8, 2014
dea6e7a
Arguments in wrong order
standage Aug 8, 2014
50f1ea8
Update index.txt
idworkin Aug 8, 2014
d46ae5d
More argument fixes
standage Aug 8, 2014
2323e99
Fixed tview command
standage Aug 8, 2014
a0cf12c
Merge pull request #6 from standage/2014
idworkin Aug 8, 2014
454d4c3
Merge pull request #5 from willpitchers/patch-2
idworkin Aug 8, 2014
8de78e3
Merge pull request #4 from ACharbonneau/patch-1
idworkin Aug 8, 2014
a79b12e
Merge pull request #3 from willpitchers/patch-1
idworkin Aug 8, 2014
11b5699
r data munging script + sample data
idworkin Aug 8, 2014
fa6e57b
modifed R munging script
idworkin Aug 8, 2014
82efbb8
Added Daniel's presentation
standage Aug 8, 2014
4302e3a
Merge pull request #7 from standage/2014
idworkin Aug 8, 2014
2611bcc
Corrected the file location
standage Aug 8, 2014
5354159
Merge pull request #8 from standage/2014
idworkin Aug 8, 2014
4930f5f
minor cleanup
ctb Aug 9, 2014
cee9b99
fiz
ctb Aug 9, 2014
2a5eeb9
lecture etc for today
ctb Aug 9, 2014
985816f
fix ami
ctb Aug 9, 2014
4fefe1d
update index
ctb Aug 9, 2014
b952714
add tutorial about amazon instance file transfer, EBS volumn
Aug 9, 2014
097b007
Merge pull request #2 from qingpeng/fix/dropbox
Aug 9, 2014
0d22af0
Merge pull request #9 from qingpeng/2014
standage Aug 9, 2014
468215d
update ints
ctb Aug 9, 2014
c548091
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
ctb Aug 9, 2014
12e3dc3
add missing figure
Aug 9, 2014
605e51e
Merge pull request #10 from qingpeng/2014
Aug 9, 2014
1faf87d
upload multiple files
Aug 9, 2014
0ec5165
Merge pull request #11 from qingpeng/2014
Aug 9, 2014
8d5318b
permission of scp
Aug 9, 2014
bb8d8eb
Merge pull request #12 from qingpeng/2014
Aug 9, 2014
1742bad
small fix
Aug 9, 2014
05734ab
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
Aug 9, 2014
ade66f5
add s3, snapshot tutorial
Aug 9, 2014
9087e50
Merge pull request #13 from qingpeng/2014
Aug 9, 2014
337d46e
minor fix and amazon index
Aug 9, 2014
507e277
Merge pull request #14 from qingpeng/2014
Aug 9, 2014
b2b083e
minor fix
Aug 9, 2014
ef00253
Merge pull request #15 from qingpeng/2014
Aug 9, 2014
dadb326
add reference amzon
Aug 9, 2014
445b59a
Merge pull request #16 from qingpeng/2014
Aug 9, 2014
4c9e290
Added PDF from Meg
idworkin Aug 11, 2014
596f68c
CHC RNAseq tutorial monday AM
idworkin Aug 11, 2014
6e0668d
modified index for tutorials
idworkin Aug 11, 2014
b17b491
added my pdf
idworkin Aug 11, 2014
4ab599d
fixed?
idworkin Aug 11, 2014
b2b8acc
possible different device id for volume
Aug 11, 2014
d8bf4d3
Merge pull request #17 from qingpeng/2014
Aug 11, 2014
1ba4f5a
added tutorial to mount volume
idworkin Aug 11, 2014
b0bc51f
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
idworkin Aug 11, 2014
cc309d0
modified Meg's script
idworkin Aug 11, 2014
48d8173
modified Meg's script
idworkin Aug 11, 2014
e6ac5b8
Added Matt's tutorial
idworkin Aug 11, 2014
5faf347
Why oh why not use the .rst
idworkin Aug 11, 2014
b18fff5
changed index
idworkin Aug 11, 2014
d68eb2b
changed index
idworkin Aug 11, 2014
706c893
Update index.txt
idworkin Aug 11, 2014
e964010
added .md for Matt
idworkin Aug 11, 2014
de0d525
Delete MacManes_tutorial.rst
idworkin Aug 11, 2014
2caf053
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
idworkin Aug 11, 2014
ecf5ac1
Update index.txt
idworkin Aug 11, 2014
b9db9f6
Update index.txt
idworkin Aug 11, 2014
6c5b08f
added the bowtie1 flag to tophat to fix version error
elijahlowe Aug 11, 2014
873e5f4
Merge pull request #18 from elijahlowe/2014
elijahlowe Aug 11, 2014
be13734
added activities
idworkin Aug 11, 2014
45818d7
changes to index
idworkin Aug 11, 2014
714821a
added adina's tutorials
Aug 11, 2014
b3011f6
Merge pull request #19 from adina/2014
adina Aug 11, 2014
305e215
Update index.txt
idworkin Aug 11, 2014
880b78a
added howe presentatoin
Aug 11, 2014
28c328c
Merge pull request #20 from adina/2014
adina Aug 11, 2014
9f19173
Update howe-ncbi.txt
adina Aug 11, 2014
89c3678
Update howe-mgrast.txt
adina Aug 11, 2014
b94bf09
modified MacManes tutorial
idworkin Aug 11, 2014
c20ad52
Merge branch '2014' of https://github.com/ngs-docs/angus into 2014
idworkin Aug 11, 2014
546f20f
added tutorials
idworkin Aug 12, 2014
c073ef7
added counts from SOAP & Trinity (BWA/eXpress)
idworkin Aug 12, 2014
68e434e
Adding lesson for dropophila RNASeq mapping with BWA and counting wit…
mestato Aug 12, 2014
ca0394e
Merge pull request #21 from mestato/2014
idworkin Aug 12, 2014
c7c89f7
Update index.txt
idworkin Aug 12, 2014
6e132a5
Update index.txt
idworkin Aug 12, 2014
c8f4c8a
added PDF
idworkin Aug 12, 2014
ea4c4e8
Update index.txt
idworkin Aug 12, 2014
a04c61d
Update index.txt
idworkin Aug 12, 2014
537f703
Fixed syntax on drosophila_rnaseq_bwa_htseq.html so that it looks pre…
mestato Aug 12, 2014
b3d6b0b
modified index, added Matt's PDF
idworkin Aug 12, 2014
c7b3662
Merge pull request #22 from mestato/2014
idworkin Aug 12, 2014
2153244
Update index.txt
idworkin Aug 12, 2014
c4a827e
Added an exit statement to get out of CPAN shell.
mestato Aug 12, 2014
e15c2a5
Merge pull request #23 from mestato/2014
standage Aug 12, 2014
4f1ecbb
added code
ialbert Aug 12, 2014
23079ce
Merge branch '2014' of github.com:ngs-docs/angus into 2014
ialbert Aug 12, 2014
9946940
Added adina to index
adina Aug 12, 2014
a70ba1d
added mgrast tutorial
adina Aug 12, 2014
cc4e9f2
fixed figures
Aug 12, 2014
3d2bf90
Merge pull request #24 from adina/2014
adina Aug 12, 2014
00caf9e
added ppt adina
Aug 12, 2014
c06436b
Merge pull request #25 from adina/2014
adina Aug 12, 2014
e967a55
fixed typo
adina Aug 12, 2014
9589110
Update index.txt
adina Aug 12, 2014
e4e88d0
fixed PATH in Short Read Quality Control tutorial
elijahlowe Aug 13, 2014
51cd524
Merge pull request #27 from elijahlowe/2014
elijahlowe Aug 13, 2014
4e78721
this is the pdf and tutorial for the Thursday afternoon long read dis…
macmanes Aug 14, 2014
b052a6b
this is the pdf and tutorial for the Thursday afternoon long read dis…
macmanes Aug 14, 2014
e7b8907
Merge pull request #31 from macmanes/master
ctb Aug 14, 2014
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*.py[co]

# Packages
*.egg
*.egg-info
dist
build
eggs
parts
bin
var
sdist
develop-eggs
.installed.cfg

# Installer logs
pip-log.txt

# Unit test / coverage reports
.coverage
.tox

#Translations
*.mo

#Mr Developer
.mr.developer.cfg

_build
*~

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