Fixing directory structure and adding additional packages to deploy t…

…o PYPI
xinglab-ai · Jul 6, 2023 · 99c1030 · 99c1030
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commit 99c1030
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diff --git a/MANIFEST.in b/MANIFEST.in
@@ -0,0 +1,5 @@
+include LICENSE
+include README.md
+
+recursive-exclude * __pycache__
+recursive-include data/readme.txt
diff --git a/genomap/__init__.py b/genomap/__init__.py
@@ -0,0 +1 @@
+from genomap import construct_genomap
diff --git a/bregman_genomap.py → genomap/bregman_genomap.py b/bregman_genomap.py → genomap/bregman_genomap.py
diff --git a/data/readme.txt → genomap/data/readme.txt b/data/readme.txt → genomap/data/readme.txt
diff --git a/genoMapDemo.html → genomap/genoMapDemo.html b/genoMapDemo.html → genomap/genoMapDemo.html
diff --git a/genoMapDemo.ipynb → genomap/genoMapDemo.ipynb b/genoMapDemo.ipynb → genomap/genoMapDemo.ipynb
diff --git a/genoMapDemo.pdf → genomap/genoMapDemo.pdf b/genoMapDemo.pdf → genomap/genoMapDemo.pdf
diff --git a/genoNet.py → genomap/genoNet.py b/genoNet.py → genomap/genoNet.py
diff --git a/genoNetus.py → genomap/genoNetus.py b/genoNetus.py → genomap/genoNetus.py
diff --git a/genomap.py → genomap/genomap.py b/genomap.py → genomap/genomap.py
diff --git a/genomapOPT.py → genomap/genomapOPT.py b/genomapOPT.py → genomap/genomapOPT.py
diff --git a/im3.png → genomap/im3.png b/im3.png → genomap/im3.png
diff --git a/main.py → genomap/main.py b/main.py → genomap/main.py
diff --git a/pyproject.toml b/pyproject.toml
@@ -0,0 +1,3 @@
+[build-system]
+requires = ["setuptools", "wheel"]
+build-backend = "setuptools.build_meta"
diff --git a/requirements.txt b/requirements.txt
@@ -0,0 +1,12 @@
+torch
+torchvision
+scipy
+scikit-learnpyclusteringpot
+phate
+pandas
+opencv-python-headless
+numpy
+matplotlib
+jupyterlab
+jupyter
+grad-cam
diff --git a/setup.cfg b/setup.cfg