SpaKnit: correlation subspace learning for integrating spatial multi-omics data

This repository contains the essential materials for reproducing the results of SpaKnit.

💡Description

SpaKnit is a multimodal integration framework for spatial multi-omics data. SpaKnit treats different omics modalities as continuous functions defined by their shared spatial coordinates, enabling it to uncover nonlinear correlations among these modalities.

🎬Getting started

We provide detailed tutorials as well as all image reproductions at SpaKnit' toturials and documentation.

Before using, please visit the link below to download all the raw data and the results: Data for SpaKnit and Results for SpaKnit.

📩Contact

Mingxuan Li: ✉️[email protected]