clean code; add comments x2; v1.2.0 #32
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| # This is a basic workflow to help you get started with Actions | |
| name: CI-Linux | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| # events but only for the master branch | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # runs-on: ubuntu-20.04 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # set up conda | |
| - name: Setup conda | |
| uses: s-weigand/[email protected] | |
| with: | |
| # miniconda-version: 'latest' | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| # install dependencies | |
| run: | | |
| conda env create -f OrthoIndex.yaml | |
| # - name: Activate | |
| # run: | | |
| # conda init bash | |
| # conda init | |
| # source /home/runner/.bashrc | |
| # cat ~/.bashrc | |
| # conda env list | |
| # conda --version | |
| # source /usr/share//miniconda/etc/profile.d/conda.sh | |
| # ls -al /usr/share/miniconda/envs/OrthoIndex/bin | |
| # which python | |
| # - run: conda activate OrthoIndex | |
| # - run: which python | |
| - name: Install SOI | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| run: | | |
| export PATH=/usr/share/miniconda/envs/OrthoIndex/bin:$PATH && python setup.py install | |
| # run: python setup.py install | |
| - name: Test SOI | |
| run: | | |
| ls -al | |
| pwd | |
| cd example_data && export PATH=/usr/share/miniconda/envs/OrthoIndex/bin:$PATH && bash example.sh | |
| # - run: cd example_data && bash example.sh | |