test macos-latest15:biopython5

Author: zhangrengang

.github/workflows/main-mac.yml

@@ -41,10 +41,8 @@ jobs:
         conda env list
         export PATH=/Users/runner/miniconda3/envs/OrthoIndex/bin:$PATH
         which python
-        ls -al /Users/runner/miniconda3/envs/OrthoIndex/
-        ls -al /Users/runner/miniconda3/envs/OrthoIndex/bin
         conda init
-        cat ~/.bashrc
+        cat /Users/runner/.bash_profile
         echo "==="
         export PATH=/Users/runner/miniconda3/envs/OrthoIndex/bin:$PATH && python setup.py install
 

example_data/example.sh

@@ -40,3 +40,4 @@ soi filter -s Populus_trichocarpa-Salix_dunnii.collinearity.gz -o Populus_tricho
 	-c 0.6 > Populus_trichocarpa-Salix_dunnii.collinearity.ortho.test
 # compare with the expected output
 diff Populus_trichocarpa-Salix_dunnii.collinearity.ortho Populus_trichocarpa-Salix_dunnii.collinearity.ortho.test
+