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Commits on Feb 24, 2017

• Merge pull request #1 from zimingz/master

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Commits on Mar 15, 2017

• Added scaleFactor & scaleSeq

  

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Commits on Mar 20, 2017

• Added output for scaling

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Commits on Mar 24, 2017

• Merge pull request #2 from stanleyjs/master

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Commits on Apr 27, 2017

• UpdatedLicenseInformation

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Commits on May 2, 2017

• Update PRFCluster.cpp

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• Fixed scaling interface

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Commits on Jun 7, 2017

• UpdatedGitHubLink

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• AddedGammaThresholdsSimulations

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• GammaThresholdsUpdates

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Commits on Aug 7, 2017

• CompiledCommandLine_C++Version_thread_issue

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• UpdatedReference_GithubLink

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Commits on Sep 8, 2017

• PipelineForMASSPRF

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• InforForPipeline&SimulationFolders

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Commits on Nov 17, 2017

• Update PRFCluster.cpp

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• Update PRFCluster.h

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• Merge pull request #3 from hrithikguy/patch-1

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• Merge pull request #4 from hrithikguy/patch-2

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Commits on Dec 3, 2017

• Update PRFCluster.cpp

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Commits on Jan 15, 2018

• Add files via upload

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Commits on Jul 4, 2018

• Add McDonald Kreitman test option "-mkt 1", which also computes the p-values of the 2x2 contingency tables.

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Commits on Aug 16, 2021

• Add note for LookupTables (Ziming update)

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Commits on Aug 19, 2021

• PRFcluster_updated_silentClustering_default_option

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• createdReadMe

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• SlientClusteringDefaultUpdated

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Commits on Dec 22, 2024

• Update README.md

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• Update PRFCluster.cpp

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Commits on Jan 22, 2025

• Add files via upload

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• Create S-design.tsv

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• Delete README.md

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• Delete S-design.tsv

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• Delete S1_MASSPRF.tsv

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• Delete SARS-CoV-2_ORF7a_Gene.pdb

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• Delete batch-design.tsv

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• Delete README.md

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• Delete orf7a_MASS_PRF.tsv

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• Create example_inputs

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• Delete 3D_Mapping_Scripts directory

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• Create Readme3

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• Delete 2D_Mapping_Scripts directory

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• Create Readme4

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• Create README for 2D Scripts

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Commits on Jan 31, 2025

• Update PRFCluster.cpp

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• Update PRFCluster.h

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• Update README.md

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• Update README.md

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• Update README.md

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• Update MASSPRFv1.1_ReadMe.txt

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Commits on Feb 1, 2025

• Update base.cpp to Improve End-of-Line Detection

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Commits on Feb 3, 2025

• Update base.cpp

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Commits on Feb 10, 2025

• Update 2D_process_massprf_res.py

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• Update base.cpp

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• Update README

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