Similar Projects

In no particular order:

Name	Descriptions	Cloud
SeqWare	SeqWare is an open-source bioinformatics workflow deployment and management system.	VM, AMI
Bpipe	Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'.	-
Nestly	Make and use nested directory trees corresponding to combinatorial choices of parameters	-
RUbioSeq	RUbioSeq software suite performes NGS data analysis in a automatic, paralellized and reliable way which is crucial to eliminate manual steps and to speed up result generation.	-
GeneProf	GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data!	-
GenomicTools	GenomicTools is a flexible computational platform for the analysis and manipulation of high-throughput sequencing data such as RNA-seq and ChIP-seq.	-
PGAP	PGAP is a pipeline for pan-genome analysis	-
Snakemake	A Python based language and execution environment for make-like workflows.	-
NARWHAL	The NARWHAL software pipeline has been developed to automate the primary analysis of massive parallel sequencing data.	-
CLoVR	Automated Sequence Analysis from Your Desktop	VM
Conveyor		-
Knime4Bio	Knime4Bio is a set of custom nodes for the KNIME (The Konstanz Information Miner) graphical workbench, for analysing NGS data without the requirement of programming skills.	-
PaPy	The papy package provides an implementation of the flow-based programming paradigm in Python that enables the construction and deployment of distributed workflows.	-
Pyicos	Pyicoteo* is a suite of tools for the analysis of high-throughput sequencing data.	-
NGS_backbone	ngs_backbone is a bioinformatic pipeline created to work on Next Generation Sequence (NGS) analysis as well as with sanger sequences.	-
Galaxy	Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.	yes
Ruffus	Ruffus is designed to allow scientific and other analyses to be automated with the minimum of fuss and the least effort.
CrossBow	Crossbow is a scalable software pipeline for whole genome resequencing analysis.	yes
Mobyle	Create your workflows and save them in your Mobyle workspace for fast and easy reuse with BMPS.
Ipython	IPython provides a rich architecture for interactive computing
Taverna	Taverna is an open source and domain-independent Workflow Management System – a suite of tools used to design and execute scientific workflows and aid in silico experimentation.
GATK Queue	GATK-Queue is command-line scripting framework for defining multi-stage genomic analysis pipelines combined with an execution manager that runs those pipelines from end-to-end.

• List may not be comprehensive