import QualityTester as QT
#matrix=Samples x Features
#labels=Samples : Integers corresponding to cluster assignement
qt = QT.QualityTester(Binary=False) #Binary=True if dataset is binary
qt.compute_distances(matrix=matrix,labels=labels,ComputeMDS=True)
suff = '_Cont' #Suffix for the name of the images
qt.displayInternal(Suffix=suff)
qt.displayMDS(Suffix=suff)
qt.displayNamesScatter(Suffix='_Cont')
IdxGoodSamples = qt.compute_samples_quality(matrix=matrix,NR=100)
qt.display_samples_quality(Suffix='_Cont')
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Test the quality of the samples in an Next Generation Sequencing dataset
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