Skip to content
@baymlab

Baym Lab at Harvard Medical School

Microbial Evolution

Popular repositories Loading

  1. wastewater_analysis wastewater_analysis Public

    Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

    Python 16 8

  2. 2020_Owen-BstA 2020_Owen-BstA Public

    Jupyter Notebook 3

  3. callmemobile callmemobile Public

    id putatively mobile genomic regions

    Python 2 1

  4. 2023_QuinonesOlvera-Owen 2023_QuinonesOlvera-Owen Public

    Code corresponding to the paper: Diverse and abundant viruses exploit conjugative plasmids (2023)

    Jupyter Notebook 1

  5. paaquita2020 paaquita2020 Public

    Visual Basic .NET

  6. project_microtrawler project_microtrawler Public

    project repo to reproduce microtrawler results

    Jupyter Notebook

Repositories

Showing 9 of 9 repositories
  • HMSphages Public

    http://phages.hms.harvard.edu

    0 0 0 0 Updated Mar 19, 2025
  • project_microtrawler Public

    project repo to reproduce microtrawler results

    Jupyter Notebook 0 0 0 0 Updated Feb 5, 2025
  • callmemobile Public

    id putatively mobile genomic regions

    Python 2 1 0 0 Updated Dec 16, 2024
  • 2022_Limdi-TnSeq-LTEE Public

    Data processing and analysis code for transposon mutagenesis sequencing of the Lenski Long-term evolution experiment

    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 20, 2024
  • wastewater_analysis Public

    Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

    Python 16 MIT 8 5 0 Updated Sep 27, 2023
  • 2023_QuinonesOlvera-Owen Public

    Code corresponding to the paper: Diverse and abundant viruses exploit conjugative plasmids (2023)

    Jupyter Notebook 1 0 0 0 Updated Sep 7, 2023
  • 2022_Limdi_limits-pooled-fitness-assays Public

    Theory, simulations, and data analysis for design of pooled fitness assays

    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 18, 2022
  • paaquita2020 Public
    Visual Basic .NET 0 0 0 0 Updated Apr 21, 2021
  • 2020_Owen-BstA Public
    Jupyter Notebook 3 0 0 0 Updated Jul 14, 2020