Repositories list

• HMSphages

  Public
  http://phages.hms.harvard.edu

  0•0•0•0•Updated Mar 19, 2025Mar 19, 2025

• project_microtrawler

  Public
  project repo to reproduce microtrawler results

  Jupyter Notebook

  •0•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• callmemobile

  Public
  id putatively mobile genomic regions

  Python

  •1•2•0•0•Updated Dec 16, 2024Dec 16, 2024

• 2022_Limdi-TnSeq-LTEE

  Public
  Data processing and analysis code for transposon mutagenesis sequencing of the Lenski Long-term evolution experiment

  evolutione-colibioinformatics+ 1genomics

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 20, 2024Jan 20, 2024

• wastewater_analysis

  Public
  Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

  Python

  •

  MIT License

  •8•16•5•0•Updated Sep 27, 2023Sep 27, 2023

• 2023_QuinonesOlvera-Owen

  Public
  Code corresponding to the paper: Diverse and abundant viruses exploit conjugative plasmids (2023)

  Jupyter Notebook

  •0•1•0•0•Updated Sep 7, 2023Sep 7, 2023

• 2022_Limdi_limits-pooled-fitness-assays

  Public
  Theory, simulations, and data analysis for design of pooled fitness assays

  genomicsexperimental-designfitness-assays+ 1genetic-screens

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 18, 2022Oct 18, 2022

• MicroTrawler

  Public
  🎣 - go fishing for ancient antibiotic resistance in public databases

  Shell

  •

  Other

  •0•1•0•0•Updated Oct 6, 2022Oct 6, 2022

• paaquita2020

  Public
  Visual Basic .NET

  •0•0•0•0•Updated Apr 21, 2021Apr 21, 2021

• 2020_Owen-BstA

  Public
  Jupyter Notebook

  •0•3•0•0•Updated Jul 14, 2020Jul 14, 2020