Skip to content

Issues: epam/Indigo

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

566 Open 1,024 Closed
566 Open 1,024 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Export to PNG/SVG works wrong for labels Export to SVG/PNG Bucket: Bugs related to SVG/PNG export Priority: Medium Severity: Medium Medium level visibility to the user
#2845 opened Apr 4, 2025 by AlexeyGirin Indigo-1.31.0-rc.2
Support for "Modification Type" property of monomers
#2844 opened Apr 4, 2025 by ljubica-milovic Indigo-1.32.0-rc.1 (current)
Support of "HELM alias" property for monomers HELM Bucket: Bugs related to Export to HELM format
#2843 opened Apr 4, 2025 by ljubica-milovic Indigo-1.32.0-rc.1 (current)
Add InChI key method to cpp api User`s Feedback
#2840 opened Apr 2, 2025 by jblack-mestre
We still need to produce a more meaningful error like xxx was not recognized as a valid SMILES string HELM Bucket: Bugs related to Export to HELM format Priority: High Severity: High High level visibility to the user
#2837 opened Mar 27, 2025 by AlexeyGirin Refined Backlog
Loading monomer NOT from the library as Unknown monomers (in the same manner as it works in IDT) HELM Bucket: Bugs related to Export to HELM format Priority: Medium Severity: Medium Medium level visibility to the user
#2836 opened Mar 27, 2025 by AlexeyGirin Indigo-1.32.0-rc.1 (current)
Loading HELM with monomers with multi-character IDs without brackets HELM Bucket: Bugs related to Export to HELM format Priority: Medium Severity: Medium Medium level visibility to the user
#2835 opened Mar 27, 2025 by AlexeyGirin Indigo-1.32.0-rc.1 (current)
Load from clipboard ignores RNA/DNA/PEP switcher and always loads DNA ambiguous bases even if RNA mode switched on Priority: High Sequence mode Bucket: Sequence mode related issues Severity: High High level visibility to the user
#2832 opened Mar 26, 2025 by AlexeyGirin Indigo-1.31.0-rc.2
@AliaksandrDziarkach
Saving of 3:3 reaction to SDF v2000 causes exception: Convert error! core: <reaction> is not a base molecule Cascade reactions Export to SDF Bucket: Export to SDF related issues MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High Severity: High High level visibility to the user
#2805 opened Mar 11, 2025 by AlexeyGirin Indigo-1.31.0-rc.2
1
@even1024
2
Ketcher fails to save structure in MOL V3000 format when encountering custom attachment labels like “Ch” Customer Feedback Export to MOL Bucket: Export to MOL related issues Priority: High Severity: High High level visibility to the user
#2781 opened Feb 20, 2025 by Zhirnoff Refined Backlog
2
Support for PNG Format
#2780 opened Feb 20, 2025 by Jelica1
Saving monomers to SDF v3000 works wrong - system saves every monomer template for every monomer on the canvas (geometry progression) Export to SDF Bucket: Export to SDF related issues Macro-Micro Bucket: Switching between Micro and Macro modes Priority: Low Severity: Low Low level visibility to the user
#2772 opened Feb 17, 2025 by AlexeyGirin Refined Backlog
Substituents are displayed backwards if appearing on the left of the molecule User`s Feedback
#2748 opened Feb 3, 2025 by jblack-mestre
1
1
Clean Up function doesn't work if query atom and monomer on the canvas at the same time Layout Priority: Medium Severity: Medium Medium level visibility to the user
#2724 opened Jan 6, 2025 by AlexeyGirin Refined Backlog
The monomer appears expanded after loading file in RXN V2000 format Export to RXN Bucket: Export to RXN related issues Priority: Medium Severity: Medium Medium level visibility to the user
#2723 opened Jan 6, 2025 by Zhirnoff Refined Backlog
Monomer could be saved to RDF V3000 format but can't be loaded back - exception Export to RDF Bucket: Export to RDF Priority: Medium Severity: Medium Medium level visibility to the user
#2722 opened Jan 6, 2025 by Zhirnoff Indigo-1.31.0-rc.2
Reaction SMILES lossily handles enhanced stereochemistry Export to SMARTS Bucket: Bugs related to Export to SMARTS Stereochemistry Bucket: Stereochemistry related issues User`s Feedback
#2720 opened Jan 2, 2025 by dan2097
2
Mismatch in Oxygen Atom Mapping Between Reactants and Product in Indigo Automapping User`s Feedback
#2719 opened Dec 31, 2024 by RamziWeslati
2
Ketcher sends different set of parameters to indigo in case of Copy/Paste and Layout operation Micromolecules canvas Bucket: Micromolecules canvas related issues Priority: High Severity: Medium Medium level visibility to the user
#2692 opened Dec 2, 2024 by AlexeyGirin Refined Backlog
@even1024
2
Truncating sign "..." isn't presented when reaction's conditions are truncated because of the long name Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Low
#2661 opened Nov 27, 2024 by ivanmaslow Refined Backlog
@even1024
Reaction's name and conditions aren't recognized on save to RDF for single/cascade reaction with simple arrows Cascade reactions MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: High
#2644 opened Nov 20, 2024 by ivanmaslow Backlog
@even1024
1
This molfile is not rendered User`s Feedback
#2614 opened Nov 5, 2024 by Tigerfink Indigo-1.31.0-rc.2
2
Text above single arrow reaction is not centered MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2609 opened Nov 5, 2024 by Zhirnoff Backlog
@even1024
1
Uppercase text extends beyond the arrow and overlaps with canvas structures MMPK Scope for Pathway reactions, View-only mode, Static images, Custom buttons and Ketcher API changes Priority: Medium
#2607 opened Nov 5, 2024 by Zhirnoff Refined Backlog
Reagents are repositioned above the reaction arrow after saving and loading RXN V2000/V3000 files Export to RXN Bucket: Export to RXN related issues Priority: High regression
#2591 opened Oct 31, 2024 by Zhirnoff Indigo-1.31.0-rc.2
ProTip! Add no:assignee to see everything that’s not assigned.