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40 Open 1,119 Closed
40 Open 1,119 Closed
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Issues list

Query about Micro-C data usage
#1295 opened Apr 23, 2025 by NMaziak
1.9 TB is insufficient memory for whole genome alignment between two 5 GB genomes.
#1272 opened Jan 22, 2025 by altuffin
split reference genome alignment would be in consistence with aligning it as a whole? split-prefix
#1270 opened Jan 13, 2025 by Alipha-Clisa
Mappy on MacOS arm_neon.h error help wanted
#1235 opened Aug 15, 2024 by christopher-vollmers
Question about different mappings of same read more info needed
#1200 opened Apr 24, 2024 by nadjano
1
Mappy segfault with long sequence and MD=True bug
#1183 opened Mar 25, 2024 by davidnewman02
2
Chaining score contributions from anchors seem to be capped by the anchor length, but the paper doesn't explain why question
#1125 opened Oct 24, 2023 by adamnovak
2
Order of operations in CIGAR enhancement
#1118 opened Sep 27, 2023 by baraaorabi
4
Single base exon in splice alignment
#1099 opened Aug 8, 2023 by baraaorabi
1
How to solve logic inconsistency? split-prefix
#1084 opened Jul 9, 2023 by Keltonc
1
Segmentation fault (core dumped) split-prefix
#1081 opened Jul 6, 2023 by Maxwell-codesome
bug? hit.c:210: mm_hit_sort: Assertion `has_cigar + no_cigar == 1' failed. split-prefix
#1067 opened May 26, 2023 by dgordon562
3
split-prefix and write_sam_cigar problems split-prefix
#1058 opened May 2, 2023 by evgenyleushkin
Get BED of uncovered regions of ref using paftools?
#1046 opened Apr 16, 2023 by tseemann
2
Large >14Gb target genome vs >200Mb query contigs fail
#1045 opened Apr 13, 2023 by Ural-Yunusbaev
Aligning short terminal exons enhancement
#1038 opened Apr 3, 2023 by MichaelHiller
6
less reads mapped in proper pair with --split-prefix split-prefix
#1036 opened Mar 28, 2023 by cocodsf
t5 and t3 flag meaning PAFTool Liftover output bed
#1032 opened Mar 15, 2023 by Nina-Tekkey
Alignment with Band Initialization
#976 opened Oct 26, 2022 by joydddd
Allow any nucleotide to map to a specific location question
#973 opened Oct 20, 2022 by meng-lab
7
Feature Request: Compress Index When Saving feature-request
#951 opened Aug 14, 2022 by schorlton
3
Documentation: Limitations "small exons" question
#948 opened Aug 3, 2022 by husamia
4
Parameters for Illumina 2*500bp PE reads
#899 opened Apr 11, 2022 by ksahlin
High memory use when using Python and threads help wanted
#855 opened Jan 5, 2022 by cjw85
10
Question about matching minimizers in all-vs-all overlaps of ONT RNA-seq reads
#822 opened Oct 9, 2021 by lauraht
2
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