Added nf-test for somalier/ancestry #7380
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GallVp
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famosab
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Feb 6, 2025
| @@ -22,8 +22,6 @@ process SOMALIER_ANCESTRY { | |||
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| script: | |||
| def args = task.ext.args ?: '' | |||
| def prefix = task.ext.prefix ?: "${meta.id}" | |||
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removed because it cannot be used?
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| labelled_somalier_tar = file("https://zenodo.org/record/3479773/files/1kg.somalier.tar.gz") | ||
| input[0] = [[id:"1kg"],labelled_somalier_tar] |
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| labelled_somalier_tar = file("https://zenodo.org/record/3479773/files/1kg.somalier.tar.gz") | |
| input[0] = [[id:"1kg"],labelled_somalier_tar] | |
| input[0] = [ [id:"1kg"], file("https://zenodo.org/record/3479773/files/1kg.somalier.tar.gz") ] |
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| whole_genome_sommalier = file("https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/somalier/whole_genome.somalier", checkIfExists: true) | ||
| labels = file("https://github.com/brentp/somalier/raw/73db124d3fe9febe3a53787707554f863595b48f/scripts/ancestry-labels-1kg.tsv", checkIfExists: true) |
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these probably need to be moved from delete_me and also both to the test_datasets repo
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Added nf-test for somalier/ancestry with pytest2nf-test