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famosab/README.md

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  1. snakemake-workflows/dna-seq-benchmark Public

    A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets

    Python 12 2

  2. qbic-pipelines/vcftomaf Public

    Nextflow pipeline to convert VCF files into MAF files.

    Nextflow 9 5

  3. wrrocmetatest Public

    Nextflow pipeline that runs a minimal working example to test the nf-prov plugin.

    Nextflow 1

  4. qbic-pipelines/vcftocounts Public

    Nextflow pipeline to transform (g)VCF files to matrices for statistical analysis.

    Nextflow 1 2

  5. stud-sci-com/stud-sci-com.github.io Public

    Repository for the website.

    HTML 2

  6. draeger-lab/refinegems Public

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

    Jupyter Notebook 11 1

1,007 contributions in the last year

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Activity overview

Contributed to nf-core/modules, qbic-pipelines/vcftomaf, qbic-pipelines/vcftocounts and 42 other repositories
Loading A graph representing famosab's contributions from February 25, 2024 to February 28, 2025. The contributions are 56% commits, 17% code review, 17% pull requests, 10% issues.

Contribution activity

February 2025

Created 1 repository

Created a pull request in nf-core/modules that received 17 comments

Allow cram output for parabricks/fq2bam module and remove fastq_align_parabricks

PR checklist Closes #XXX This comment contains a description of changes (with reason). If you've fixed a bug or added code that should be test…

+329 −318 lines changed 17 comments
Opened 15 other pull requests in 6 repositories
Reviewed 22 pull requests in 4 repositories
  • Dev
    This contribution was made on Feb 27
Opened 2 other issues in 1 repository
nf-core/modules 2 open
20 contributions in private repositories Feb 3 – Feb 27
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