Skip to content

@CalCOFI CalCOFI

Change the repository type filter

All

    Repositories list

    21 repositories

    • workflows

      Public
      helper scripts in R for common workflows
      HTML
      •
      MIT License
      •0•0•22•0•Updated Mar 18, 2025Mar 18, 2025

    • apps

      Public
      Shiny app demo for CalCOFI
      R
      •
      MIT License
      •0•0•10•0•Updated Mar 18, 2025Mar 18, 2025

    • calcofi4r

      Public
      R package of data wrangling and visualization functions for working with CalCOFI data
      R
      •
      Other
      •2•0•4•0•Updated Mar 18, 2025Mar 18, 2025

    • docs

      Public
      Help documentation for the constellation of webenized and workflow products (in bookdown)
      Mermaid
      •
      MIT License
      •0•0•2•0•Updated Mar 13, 2025Mar 13, 2025

    • server

      Public
      calcofi.io server setup for R Shiny apps, RStudio IDE, R Plumber API, temporary PostGIS database, pg_tileserv
      Go
      •
      MIT License
      •0•0•6•0•Updated Mar 13, 2025Mar 13, 2025

    • eDNA-protocols

      Public
      Protocols for sampling, processing, and analysis of eDNA collected on CalCOFI cruises. All protocols are formatted according to guidelines from Better Biomolecular Ocean Practices (BeBOP) using Minimum Information about an Omics Protocol (MIOP) terms.
      Creative Commons Zero v1.0 Universal
      •1•1•0•0•Updated Mar 6, 2025Mar 6, 2025

    • api

      Public
      Test application programming interface (API)
      R
      •0•1•3•0•Updated Feb 13, 2025Feb 13, 2025

    • marmam-app

      Public
      Collaboration of UCSB Data Science Capstone students and CalCOFI to generate RShiny App for visualizing CalCOFI marine mammal visual observations and eDNA detections
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • CalCOFI.github.io

      Public
      Default Github products website
      CSS
      •
      MIT License
      •0•0•3•0•Updated Dec 16, 2024Dec 16, 2024

    • SaferSeafood

      Public
      Repository containing files and data for developing the R Shiny online application.
      HTML
      •1•0•5•0•Updated Nov 16, 2024Nov 16, 2024

    • CalCOFI_eDNA

      Public
      Data and code needed to conduct analysis for Marine Heatwave-Driven Impacts on Fish Assemblages Uncovered Through Archived DNA
      HTML
      •0•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • rCRUX

      Public
      A repository for my work on rCRUX
      noaa-omics-softwarenoaa-omics-studynoaa-omics-data
      R
      •
      GNU General Public License v3.0
      •7•11•11•0•Updated Jun 21, 2024Jun 21, 2024

    • CalCOFI_map

      Public
      Map of CalCOFI station grid
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 22, 2024Mar 22, 2024

    • prj-mgt

      Public
      project management
      MIT License
      •0•0•6•0•Updated Feb 26, 2024Feb 26, 2024

    • OceanView

      Public
      App that can incentivize ocean users to report their observations
      Dart
      •0•1•10•1•Updated Jan 17, 2024Jan 17, 2024

    • pollutants-app

      Public
      Pollutants app (starting with DDT, PFAS, microplastics) with CalCOFI regional partners
      JavaScript
      •
      MIT License
      •0•0•1•0•Updated Nov 13, 2023Nov 13, 2023

    • hypoxia-story

      Public
      HTML
      •0•1•0•0•Updated Feb 14, 2023Feb 14, 2023

    • capstone

      Public
      Capstone project for CCDSP fellowship, where we will store data and code
      R
      •2•1•10•0•Updated Jun 7, 2022Jun 7, 2022

    • viz-gallery

      Public
      Test for data visualization gallery
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 1, 2021Dec 1, 2021

    • CalCOFI_3yr_Review

      Public
      Code for CalCOFI's 3 year review
      R
      •0•0•0•0•Updated Jun 5, 2021Jun 5, 2021

    • larvae-cinms

      Public
      Extraction of CalCOFI larvae data for Channel Islands Webenized Condition Report
      HTML
      •1•0•3•0•Updated Jan 8, 2020Jan 8, 2020