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    211 repositories

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •3•3•1•2•Updated Apr 9, 2025Apr 9, 2025

    • ensembl-py

      Public
      Python Ensembl code source repository
      Python
      •
      Apache License 2.0
      •11•5•0•0•Updated Apr 9, 2025Apr 9, 2025

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•1•Updated Apr 9, 2025Apr 9, 2025

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•18•0•2•Updated Apr 9, 2025Apr 9, 2025

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•13•0•1•Updated Apr 9, 2025Apr 9, 2025

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•52•0•4•Updated Apr 8, 2025Apr 8, 2025

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •9•39•2•0•Updated Apr 8, 2025Apr 8, 2025

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •51•22•0•0•Updated Apr 8, 2025Apr 8, 2025

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •43•11•0•9•Updated Apr 7, 2025Apr 7, 2025

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •3•4•0•0•Updated Apr 7, 2025Apr 7, 2025

    • ensembl-utils

      Public
      Ensembl python utils
      Python
      •
      Apache License 2.0
      •3•3•0•0•Updated Apr 3, 2025Apr 3, 2025

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •9•9•0•2•Updated Apr 3, 2025Apr 3, 2025

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •5•2•0•1•Updated Apr 3, 2025Apr 3, 2025

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •56•28•0•13•Updated Apr 3, 2025Apr 3, 2025

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •157•477•56•7•Updated Apr 3, 2025Apr 3, 2025

    • ensembl-genes-metadata

      Public
      Perl
      •
      Apache License 2.0
      •0•1•2•1•Updated Apr 2, 2025Apr 2, 2025

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •47•9•0•2•Updated Apr 1, 2025Apr 1, 2025

    • ensembl-orm

      Public
      API for non genomic databases
      Perl
      •
      Apache License 2.0
      •2•1•0•0•Updated Apr 1, 2025Apr 1, 2025

    • ensembl-echo

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • ensembl-anno

      Public
      Python
      •
      Apache License 2.0
      •7•10•1•4•Updated Apr 1, 2025Apr 1, 2025

    • datascout

      Public
      This repo queries and gather data from different resources which can then be used to run bulk automatised annotation of microbial genomes.The different types of data are: OrthoDB and UniProt orthology data; Rfam (non coding Rna data); Transcriptomic data from ENA
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•3•Updated Mar 28, 2025Mar 28, 2025

    • ensembl-prodinf-core

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 27, 2025Mar 27, 2025

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Mar 25, 2025Mar 25, 2025

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•2•Updated Mar 25, 2025Mar 25, 2025

    • ensembl-otter

      Public
      annosoft
      Perl
      •3•3•0•0•Updated Mar 25, 2025Mar 25, 2025

    • ensembl-prodinf-dbcopy

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•2•Updated Mar 18, 2025Mar 18, 2025

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •119•144•7•3•Updated Mar 17, 2025Mar 17, 2025

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Mar 17, 2025Mar 17, 2025

    • ensembl-production-imported

      Public
      Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
      Perl
      •
      Apache License 2.0
      •4•1•0•0•Updated Mar 14, 2025Mar 14, 2025