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Steinegger Lab

Steinegger Lab Github repositories

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  1. foldseek foldseek Public

    Foldseek enables fast and sensitive comparisons of large structure sets.

    C 959 122

  2. foldcomp foldcomp Public

    Compressing protein structures effectively with torsion angles

    C++ 172 14

  3. Metabuli Metabuli Public

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    C++ 132 12

  4. foldmason foldmason Public

    Multiple Protein Structure Alignment at Scale with FoldMason

    C 163 16

  5. unicore unicore Public

    Universal and efficient core gene phylogeny with Foldseek and ProstT5

    Rust 55 5

  6. folddisco folddisco Public

    Fast indexing and search of discontinuous motifs in protein structures

    Rust 21 2

Repositories

Showing 10 of 31 repositories
  • foldseek Public

    Foldseek enables fast and sensitive comparisons of large structure sets.

    steineggerlab/foldseek’s past year of commit activity
    C 959 GPL-3.0 122 111 5 Updated Apr 22, 2025
  • foldcomp Public

    Compressing protein structures effectively with torsion angles

    steineggerlab/foldcomp’s past year of commit activity
    C++ 172 GPL-3.0 14 26 (5 issues need help) 0 Updated Apr 21, 2025
  • steineggerlab/afesm-clusters-web’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 3 0 0 Updated Apr 21, 2025
  • foldmason Public

    Multiple Protein Structure Alignment at Scale with FoldMason

    steineggerlab/foldmason’s past year of commit activity
    C 163 GPL-3.0 16 15 0 Updated Apr 21, 2025
  • steineggerlab/afesm-analysis’s past year of commit activity
    0 0 0 0 Updated Apr 19, 2025
  • Metabuli Public

    Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

    steineggerlab/Metabuli’s past year of commit activity
    C++ 132 GPL-3.0 12 19 0 Updated Apr 17, 2025
  • SeekRank Public

    Rank homologous protein sequences based on a regressor trained on experimental measures

    steineggerlab/SeekRank’s past year of commit activity
    Jupyter Notebook 10 MIT 1 0 0 Updated Apr 11, 2025
  • probeit Public

    Design capture probes

    steineggerlab/probeit’s past year of commit activity
    Python 9 GPL-3.0 2 0 0 Updated Apr 11, 2025
  • unicore Public

    Universal and efficient core gene phylogeny with Foldseek and ProstT5

    steineggerlab/unicore’s past year of commit activity
    Rust 55 GPL-3.0 5 3 0 Updated Apr 7, 2025
  • steineggerlab/foldmason-analysis’s past year of commit activity
    R 1 0 0 0 Updated Apr 7, 2025

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