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Question:I have some doubts when comparing FASTA with PDB

Status: Open.

#501 In steineggerlab/foldseek;

· 2274939692qa-beep opened on Aug 8, 2025

Pairwise structural alignment of 2 pdb files

Status: Open.

#500 In steineggerlab/foldseek;

· mohammadian-reza opened on Aug 5, 2025

Search subset of accessions in web service

Status: Open.

#499 In steineggerlab/foldseek;

· aflaus opened on Aug 4, 2025

is it possible to query a protein against four different databases?

enhancementNew feature or requestNew feature or request

Status: Open.

#498 In steineggerlab/foldseek;

· mikenada02 opened on Aug 4, 2025

FoldSeek easy-search taxonomy output associated seg fault

Status: Open.

#497 In steineggerlab/foldseek;

· ilikevirusevo opened on Aug 1, 2025

Question:When using Foldseek to align two complex PDB structures, all the output results distinguish between chains A and B. If I want to obtain the overall alignment results without chain A and B being differentiated, how should I do it?

Status: Open.

#495 In steineggerlab/foldseek;

· 2274939692qa-beep opened on Aug 1, 2025

Question: Recommended workflow for clustering 3Di tokens with MMseqs2

Status: Open.

#494 In steineggerlab/foldseek;

· SuperCarryDFY opened on Jul 31, 2025

Taxon specific subdb of AlphaFold/UniProt or AlphaFold/UniProt50

Status: Open.

#492 In steineggerlab/foldseek;

· draperbarr opened on Jul 26, 2025

GPU and parallelisation for beginners

Status: Open.

#491 In steineggerlab/foldseek;

· draperbarr opened on Jul 24, 2025

Does foldseek has a cutoff for query length?

Status: Open.

#487 In steineggerlab/foldseek;

· Deborah-Bebey opened on Jul 21, 2025

Creating TED subDB

Status: Open.

#483 In steineggerlab/foldseek;

· bordin89 opened on Jul 10, 2025

Result discrepancy when using AlphaFold DB vs. individual PDB files

Status: Open.

#481 In steineggerlab/foldseek;

· tnat1031 opened on Jul 8, 2025