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standardized vcf files from Manta and Lumpy can not be indexed with tabix -p vcf *.vcf.gz

Status: Open.

#100 In talkowski-lab/svtk;

· liud2 opened on Sep 23, 2020

svtk bedcluster doesn't cluster events with identical coordinates

Status: Open.

#99 In talkowski-lab/svtk;

· mgonzalezporta opened on Sep 10, 2020

Creating a release/tag?

Status: Open.

#98 In talkowski-lab/svtk;

· holtgrewe opened on Apr 29, 2020

"no_effect" INFO tag

Status: Open.

#97 In talkowski-lab/svtk;

· kpjonsson opened on Nov 11, 2019

standardization not giving proper output

Status: Open.

#96 In talkowski-lab/svtk;

· Sendeman opened on Oct 7, 2019

setup.py imports

Status: Open.

#94 In talkowski-lab/svtk;

· jjfarrell opened on Aug 26, 2019

No module named 'svtk.baf' error

Status: Open.

#93 In talkowski-lab/svtk;

· jjfarrell opened on Aug 26, 2019

vcfcluster for pacbio SV calls?

Status: Open.

#89 In talkowski-lab/svtk;

· ggstatgen opened on Apr 5, 2019

Clustering on second chr for translocation doesn't seem to be occurring for svtk resolve

Status: Open.

#86 In talkowski-lab/svtk;

· hab45 opened on Jan 25, 2019

svtk resolve breaks if unresolved file not specified

Status: Open.

#85 In talkowski-lab/svtk;

· hab45 opened on Jan 16, 2019

Typo in svtk help text

Status: Open.

#55 In talkowski-lab/svtk;

· RCollins13 opened on Apr 5, 2018

Report samples with zero variants in svtk count-svtypes

Status: Open.

#49 In talkowski-lab/svtk;

· RCollins13 opened on Mar 20, 2018